PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G165901.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 98aa MW: 11337.3 Da PI: 9.7061 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.9 | 2e-14 | 37 | 92 | 41 | 97 |
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 + W+ + +++r++l +GW +Fv++n+L gD+++F+l+++ +e +++v+++ Sobic.001G165901.1.p 37 CGRNIWKASM--VTYRQRHYLCGGWHKFVRDNDLSLGDICLFELKRNeRELTMMVHII 92 45589*****..999******************************9989999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0077 | 1 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.87E-12 | 1 | 93 | No hit | No description |
PROSITE profile | PS50863 | 10.912 | 1 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.27E-17 | 13 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 14 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.3E-12 | 32 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MRQFSLGISR KPVLELGSRY ATAVNLPNGE QAVVLWCGRN IWKASMVTYR QRHYLCGGWH 60 KFVRDNDLSL GDICLFELKR NERELTMMVH IIPMKEL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G165901.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313020.1 | 4e-69 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q6AV22 | 5e-17 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A1Z5S612 | 5e-67 | A0A1Z5S612_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ib02115.1.p | 6e-24 | (Panicum virgatum) | ||||
STRING | Pavir.Ib02116.1.p | 3e-24 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 3e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G165901.1.p |
Publications ? help Back to Top | |||
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