PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G165100.12.p | ||||||||
Common Name | Sb01g014410, SORBIDRAFT_01g014410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 30149.4 Da PI: 9.9709 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.4e-17 | 34 | 114 | 11 | 97 |
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + rl +p kf +h g++ + ++le++ g +++ ++ k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+ +v + Sobic.001G165100.12.p 34 EFRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFI 113 3456899*****6.5556555...457***************..*******************************7775554..6666 PP E CS B3 97 f 97 f Sobic.001G165100.12.p 114 F 114 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.51E-21 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.829 | 24 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-22 | 25 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-20 | 25 | 115 | No hit | No description |
SMART | SM01019 | 1.1E-5 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-15 | 28 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-5 | 220 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-6 | 221 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.36 | 223 | 266 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSKPGKRSKE SNAYFYPDDK DGKDKYFFKV LVGEFRERLA VPDKFEQHFR GLIGNRVKLE 60 SRCGHTFDAE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDGTSRLK VFIFDLSCCE 120 KVPPCRVKRN HICGRETREI NTETSSTCGD LPLNVTASSS TSPSDSSGDS ISPEDQKSHY 180 VPGYILPRRT YLTCVQMKKL KERVRASTST IPIYGCIVKK SNLRRGSQAM SWDVRCITHK 240 GRPNRGKSLS QGWKQFARDN KLQSCN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.18842 | 0.0 | panicle |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G165100.12.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307300.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X4 | ||||
TrEMBL | A0A1Z5S5Y3 | 0.0 | A0A1Z5S5Y3_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1Z5S5Y9 | 0.0 | A0A1Z5S5Y9_SORBI; Uncharacterized protein | ||||
STRING | Sb01g014410.1 | 1e-154 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G165100.12.p |
Entrez Gene | 8062496 |