PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G164800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 377aa MW: 42565.9 Da PI: 7.1038 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.3 | 3.3e-19 | 39 | 119 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++p +fa++++g s ++l+++sg++W++ + +++vl++GWkeFv+a+ ++egD ++Fk++g s+f v vf++ Sobic.001G164800.1.p 39 TETMSIPARFANNFNGH--ISEVISLKSPSGKTWSIGV--GSDTDEVVLQSGWKEFVSAHSIDEGDCMLFKYTGVSSF--DVLVFDS 119 4569*******888666..6779***************..999999***************************99999..8888876 PP | |||||||
2 | B3 | 46 | 9.2e-15 | 266 | 360 | 2 | 94 |
EEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.. CS B3 2 fkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.. 85 ++v+ p +v ++ g + ++ +fa+++ g +s++++le s +W v+++ ++ s+ + ++GW+eFv +ngL + D+++F+l+ Sobic.001G164800.1.p 266 VQVMHPTHVRSTkpGVVGISAEFADKYLGA--TSRDVILEKgGSKGKWHVRYNRNRFSR-GLTGRGWSEFVADNGLLAHDVCLFELMvi 351 556655555555558889*********666..56689999967779******5444444.57789********************6532 PP .SSSEE..EE CS B3 86 .grsefelvv 94 g + ++++v Sobic.001G164800.1.p 352 nG-KLRRPTV 360 23.4444443 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-24 | 25 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-24 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.776 | 27 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-18 | 28 | 118 | No hit | No description |
SMART | SM01019 | 1.4E-9 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-16 | 39 | 118 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.08E-17 | 259 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 259 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.51E-13 | 263 | 366 | No hit | No description |
SMART | SM01019 | 4.3E-8 | 265 | 368 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-12 | 266 | 362 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.574 | 267 | 368 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MKNLDKNCRI CMEWQEHYYW NHMADDKKHF FKPMVGDFTE TMSIPARFAN NFNGHISEVI 60 SLKSPSGKTW SIGVGSDTDE VVLQSGWKEF VSAHSIDEGD CMLFKYTGVS SFDVLVFDSS 120 GCEKTWPHFT RNSSHGYKRI ESSAGLEEGP RLGCRRFKGG HDCTCTPQSL PSDGDDDDDD 180 AHLELALHRS TSRSIPKRCK RKLYRDIEQV HGEVKDDDDE DDVGDAKTGY YFCKNGPVSE 240 YHLKEQEKEE ISSIRVPVEP RNPVFVQVMH PTHVRSTKPG VVGISAEFAD KYLGATSRDV 300 ILEKGGSKGK WHVRYNRNRF SRGLTGRGWS EFVADNGLLA HDVCLFELMV INGKLRRPTV 360 TVHVLRKVRG AFVLLP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 195 | 202 | PKRCKRKL |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G164800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466799.2 | 0.0 | B3 domain-containing protein Os03g0622200 | ||||
Swissprot | Q10GM3 | 1e-143 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A1B6QJA1 | 0.0 | A0A1B6QJA1_SORBI; Uncharacterized protein | ||||
STRING | Sb01g014370.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-25 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G164800.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|