PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G163800.1.p | ||||||||
Common Name | Sb01g014310, SORBIDRAFT_01g014310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37257.4 Da PI: 8.2827 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.5 | 4.3e-56 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yL++kv++ + + ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkd Sobic.001G163800.1.p 5 LPPGFRFHPTDEELVTYYLTRKVSDFAFAT-RAIADVDLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKD 92 79*************************999.89***************999999*********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ke+++ g lvg+kktLvfy+grapkg+kt+Wvmheyrl Sobic.001G163800.1.p 93 KEIFH-CGMLVGMKKTLVFYRGRAPKGQKTSWVMHEYRL 130 *****.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.215 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEEGLPPGFR FHPTDEELVT YYLTRKVSDF AFATRAIADV DLNKCEPWDL PSKASMGEKE 60 WYFFSMRDRK YPTGIRTNRA TDSGYWKTTG KDKEIFHCGM LVGMKKTLVF YRGRAPKGQK 120 TSWVMHEYRL QNKFPYKPNK EEWVVCRVFK KCQVIKMRPP QDSPTMGSPC HDAGNASLGE 180 LGELDVSSIL GGLAAAAAHT SSGSPPGVLH HQGSAAAAES FVGAHNRPVD MSAYMSWMAA 240 ANQGAAAAAA MLPWATTTPP GLFGNVFAPN NHQLLQKPLP FAGGCSGQPR GLGGVVANNV 300 VVGSGEHAMF GSSVVKVGME CDQQQQPEQQ LGMDESTWRT F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 5 | 151 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 5 | 151 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 5 | 151 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 5 | 151 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G163800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363171 | 0.0 | AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466794.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | C5WS74 | 0.0 | C5WS74_SORBI; Uncharacterized protein | ||||
STRING | Sb01g014310.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 6e-94 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G163800.1.p |
Entrez Gene | 8062253 |