PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G149000.2.p

Common Name

Sb01g012970, SORBIDRAFT_01g012970

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 1078aa MW: 116787 Da PI: 5.3161

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G149000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.1	4.6e-31	88	191	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkw 76 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + rrtra+tr+gCka+++vkk+++g+w Sobic.001G149000.2.p 88 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevsradavdpgdddGGRGRRTRAVTRVGCKAMIRVKKQDNGRW 176 ********************************************************998999********************* PP FAR1 77 evtkleleHnHelap 91 vtkle+ HnH+l+p Sobic.001G149000.2.p 177 SVTKLETAHNHPLVP 191 **********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-29	88	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-20	310	399	IPR018289	MULE transposase domain
Pfam	PF04434	3.8E-9	583	620	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.744	585	623	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-7	598	625	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1078 aa Download sequence Send to blast
MDMERGAGSE QGSPDSEMGD GDNDSVGYGA EMEVDAGSGS AGASAPASSA SASASVSASA 60 YAARAGAYDG VDPFEGMEFD DEEDAWTFYN VYAHRVGFST RISVMHRSRR DGSVMSRQFV 120 CAKEGFRTYR GKNEVSRADA VDPGDDDGGR GRRTRAVTRV GCKAMIRVKK QDNGRWSVTK 180 LETAHNHPLV PANQAHCLRP HKPLSECGKQ RPFGGHRNGG SLLAIEPPPP PLTPPVPHTS 240 IPQVVPQYVS DGIGNGTRVI LDYVKRMQAE DPAFFYAMQF VEGRPVGNVF WADARARTAY 300 KDFGDAVVLD DYCKRSKHEL PLVAFTGVNH HCQPVLFGCA IMAHNNEASF IWLFETFLLA 360 MSGQQPTSLT MEHDNALKSA ALKVFPLTRL QFCKWHIMNE AQDKLSYLLD AFPSFHEDFI 420 NCVNMSDTIN EFETNWKALI SKVSSQKTEW LDLVYNCRHQ WVPVYLRDTF FGDVSLKLQC 480 SSRSSLFEGY ISAKTDSQSF IQQYEKALDC CYEKEVKEEF ETKYSLPDIK TPSPIEKQGA 540 ELYTRSMFLK FQQELIDASV YTAEMVKEVG NASVYTVTRS EGSEKSVTVE FSSSGSSATC 600 SCRMFEYFGI VCRHILTVFG VRGVSALPSH YFVKRWTKNA LDRSSGKNVD EVSRVEEPKE 660 EQRSSAEDDE QSLTWRYNSL CREALRYAEE GASSLEVYIV AMQALQEAAN RVNMAKRGIG 720 QVAPLAVMPI AAQPPESFAR NQGIISNKQK KRKRNSNSSR ENATSNQLMY VQQPVNFLFV 780 APGPGSSSAL QGPSQLVAAA PVSLSSKYGQ TSGANNSVDD NIPPASVVDK FSGLPDRNAS 840 APSTGNLQGG ETKSIGADLR IKESHELSQA NGSRGCSVNT LNSSAVPQLV TVPIGLCLPS 900 TDASKISAAG MNSVNSGDIS SNGKLSFGQS QSSAQQPATP SQTKTLDRID SRANPEGSSI 960 RAAAIAAGAR IASPSDAATI IKAAQSKGAI HIRPGENLPN YLKPLAPKPL SSLPPVNPLS 1020 SAHASPGQHS FGDSAAAKDA IFGSSDGSDD DEEDTDDEED TDDDEDEGLT GDDAEHE*

Sequence ? help Back to Top

Protein Sequence Length: 1078 aa Download sequence Send to blast

MDMERGAGSE QGSPDSEMGD GDNDSVGYGA EMEVDAGSGS AGASAPASSA SASASVSASA  60
YAARAGAYDG VDPFEGMEFD DEEDAWTFYN VYAHRVGFST RISVMHRSRR DGSVMSRQFV  120
CAKEGFRTYR GKNEVSRADA VDPGDDDGGR GRRTRAVTRV GCKAMIRVKK QDNGRWSVTK  180
LETAHNHPLV PANQAHCLRP HKPLSECGKQ RPFGGHRNGG SLLAIEPPPP PLTPPVPHTS  240
IPQVVPQYVS DGIGNGTRVI LDYVKRMQAE DPAFFYAMQF VEGRPVGNVF WADARARTAY  300
KDFGDAVVLD DYCKRSKHEL PLVAFTGVNH HCQPVLFGCA IMAHNNEASF IWLFETFLLA  360
MSGQQPTSLT MEHDNALKSA ALKVFPLTRL QFCKWHIMNE AQDKLSYLLD AFPSFHEDFI  420
NCVNMSDTIN EFETNWKALI SKVSSQKTEW LDLVYNCRHQ WVPVYLRDTF FGDVSLKLQC  480
SSRSSLFEGY ISAKTDSQSF IQQYEKALDC CYEKEVKEEF ETKYSLPDIK TPSPIEKQGA  540
ELYTRSMFLK FQQELIDASV YTAEMVKEVG NASVYTVTRS EGSEKSVTVE FSSSGSSATC  600
SCRMFEYFGI VCRHILTVFG VRGVSALPSH YFVKRWTKNA LDRSSGKNVD EVSRVEEPKE  660
EQRSSAEDDE QSLTWRYNSL CREALRYAEE GASSLEVYIV AMQALQEAAN RVNMAKRGIG  720
QVAPLAVMPI AAQPPESFAR NQGIISNKQK KRKRNSNSSR ENATSNQLMY VQQPVNFLFV  780
APGPGSSSAL QGPSQLVAAA PVSLSSKYGQ TSGANNSVDD NIPPASVVDK FSGLPDRNAS  840
APSTGNLQGG ETKSIGADLR IKESHELSQA NGSRGCSVNT LNSSAVPQLV TVPIGLCLPS  900
TDASKISAAG MNSVNSGDIS SNGKLSFGQS QSSAQQPATP SQTKTLDRID SRANPEGSSI  960
RAAAIAAGAR IASPSDAATI IKAAQSKGAI HIRPGENLPN YLKPLAPKPL SSLPPVNPLS  1020
SAHASPGQHS FGDSAAAKDA IFGSSDGSDD DEEDTDDEED TDDDEDEGLT GDDAEHE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G149000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF466201	0.0	AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021306406.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5S5M8	0.0	A0A1Z5S5M8_SORBI; Uncharacterized protein
STRING	Sb01g012970.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-163	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.001G149000.2.p
Entrez Gene	8056771