PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G149000.1.p
Common NameSb01g012970, SORBIDRAFT_01g012970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 768aa    MW: 85295.7 Da    PI: 6.5993
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G149000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.82.9e-3186189291
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkw 76 
                           fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+                + rrtra+tr+gCka+++vkk+++g+w
  Sobic.001G149000.1.p  86 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevsradavdpgdddGGRGRRTRAVTRVGCKAMIRVKKQDNGRW 174
                           **********************************************************998999************************* PP

                  FAR1  77 evtkleleHnHelap 91 
                            vtkle+ HnH+l+p
  Sobic.001G149000.1.p 175 SVTKLETAHNHPLVP 189
                           ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2986189IPR004330FAR1 DNA binding domain
PfamPF105515.3E-20308397IPR018289MULE transposase domain
PfamPF044342.6E-9581618IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.744583621IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-7596623IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MERGAGSEQG SPDSEMGDGD NDSVGYGAEM EVDAGSGSAG ASAPASSASA SASVSASAYA  60
ARAGAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA  120
KEGFRTYRGK NEVSRADAVD PGDDDGGRGR RTRAVTRVGC KAMIRVKKQD NGRWSVTKLE  180
TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FGGHRNGGSL LAIEPPPPPL TPPVPHTSIP  240
QVVPQYVSDG IGNGTRVILD YVKRMQAEDP AFFYAMQFVE GRPVGNVFWA DARARTAYKD  300
FGDAVVLDDY CKRSKHELPL VAFTGVNHHC QPVLFGCAIM AHNNEASFIW LFETFLLAMS  360
GQQPTSLTME HDNALKSAAL KVFPLTRLQF CKWHIMNEAQ DKLSYLLDAF PSFHEDFINC  420
VNMSDTINEF ETNWKALISK VSSQKTEWLD LVYNCRHQWV PVYLRDTFFG DVSLKLQCSS  480
RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSLPDIKTP SPIEKQGAEL  540
YTRSMFLKFQ QELIDASVYT AEMVKEVGNA SVYTVTRSEG SEKSVTVEFS SSGSSATCSC  600
RMFEYFGIVC RHILTVFGVR GVSALPSHYF VKRWTKNALD RSSGKNVDEV SRVEEPKEEQ  660
RSSAEDDEQS LTWRYNSLCR EALRYAEEGA SSLEVYIVAM QALQEAANRV NMAKRGIGQV  720
APLAVMPIAA QPPESFARNQ GIISNKQKKR KRNSNSSREN ATSNQLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G149000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662010.0AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306406.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5S5M80.0A0A1Z5S5M8_SORBI; Uncharacterized protein
STRINGSb01g012970.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-166FAR1-related sequence 5