PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G148000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 142aa MW: 15123.7 Da PI: 9.0457 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.6 | 2.3e-22 | 44 | 101 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++ C +kkkve +dp+ + i+Yeg H+h Sobic.001G148000.1.p 44 EDGYEWKKYGQKFIKNIQKIRSYFRCRHKLCGAKKKVEWHPRDPSGdLRIVYEGAHQH 101 7******************************************985499********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 17.787 | 38 | 104 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-23 | 40 | 104 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-20 | 40 | 104 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-24 | 43 | 103 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-20 | 44 | 101 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDSSSQPGAI GSGGGGERNQ REEDEAAAAA AAEAGYGRQL VMPEDGYEWK KYGQKFIKNI 60 QKIRSYFRCR HKLCGAKKKV EWHPRDPSGD LRIVYEGAHQ HGAPAAAAPP GPGGQHHGGG 120 ASDFNRYELG AQYFGGAGRS H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G148000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF466201 | 1e-130 | AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds. | |||
GenBank | EU970633 | 1e-130 | EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464130.2 | 4e-99 | probable WRKY transcription factor 58 | ||||
TrEMBL | A0A1B6QJ20 | 1e-97 | A0A1B6QJ20_SORBI; Uncharacterized protein | ||||
STRING | Sb01g012870.1 | 7e-69 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.1 | 1e-11 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G148000.1.p |