PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G137300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 447aa    MW: 48685.3 Da    PI: 7.0114
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G137300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sobic.001G137300.1.p  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                          ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-11153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-11543No hitNo description
CDDcd002024.47E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.6E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYIPMHR KDDVDDDEPR  60
VSRLKPPTSK SKSQKKKSNH IIMENGPFSC QNFQKMGDAD PSNWSSSGSA VSYSESCVAD  120
ASEMTGSAQS HAWESLVPSR KRSCVTLLKT SSVEKLAKDL NSIMHEEQLY YLSGSSEEDL  180
LYHSETPVGS FEIGSGSVLL RHPNSKSLEE ESEASSIPAD NKSYITSESY SGSVSFVSHS  240
GNKAAINLNA GTLRPKRSPL CIEDNGRRDK LHYENPHILE SVDSPLVSAY LEEKEIKETR  300
GVENISGSKG FTKSTIKPVK RSRDDNHFQS NSELDGTMRS PIRALKSGAL TPQFKNSSLP  360
KSGYASKDST CTEGALNLLM LPPEKLSLFV PSQYANSDQD LLLEIPLNAR HPEAELLCQP  420
SQLSSITHSS TSVDGVADGE GHLKQP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188740.0callus| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G137300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424870.0BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds.
GenBankEU9621170.0EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds.
GenBankKJ7268460.0KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307180.10.0GATA transcription factor 26
TrEMBLA0A1B6QIV80.0A0A1B6QIV8_SORBI; Uncharacterized protein
STRINGSb06g024200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-55GATA transcription factor 26