PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G137200.1.p
Common NameSb01g011970, SORBIDRAFT_01g011970
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 357aa    MW: 38949.3 Da    PI: 6.2464
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G137200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-082923242254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           ++yp+  e+ +LA  +gL+ rq+++WF N R +
  Sobic.001G137200.1.p 292 HPYPDDGEKLRLAVTTGLSRRQISNWFINARVR 324
                           89*****************************88 PP
2BELL538.4e-181462071071
                  BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                            kLl ll e++ r ++y  +l  v+ssFe + g g+a+ Ytsl  +a++rhF +L+ ai  +
  Sobic.001G137200.1.p 146 DKLLGLLSELESRRERYFGELGRVVSSFEPALGDGAAAAYTSLMARAMARHFGNLRRAILRR 207
                           59*********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-982206IPR006563POX domain
PfamPF075263.5E-2385204IPR006563POX domain
CDDcd000869.65E-11268329No hitNo description
SMARTSM003895.9E-9268332IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-24273334IPR009057Homeodomain-like
SuperFamilySSF466893.04E-17274336IPR009057Homeodomain-like
PfamPF059203.7E-17285324IPR008422Homeobox KN domain
PROSITE profilePS5007111.353287328IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVMAKQQQHD KGSPKQARNE PAPPPQPAPF RLEHCCHCDG AHGQADDGPN GAGPLHLTLG  60
PAADRRRRCS CGVAPAPAAP VTVAVLRGSR YLRPAQELLG DVVRVADLAA GDDEDEDQAD  120
ADRLEGGGRH RSLRRAAGND GDGVQDKLLG LLSELESRRE RYFGELGRVV SSFEPALGDG  180
AAAAYTSLMA RAMARHFGNL RRAILRRLRL HAAAAARRSL RRGVEAGDHD HDEDEDEDGD  240
EEVTEELVER VARRTKLAAA ARAEQASWRP LRGLPDGSVA VLRAWLFDHF LHPYPDDGEK  300
LRLAVTTGLS RRQISNWFIN ARVRLWKPMI EEMYQDEFTE GSAVSRDDDA SASSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16274332563Homeobox protein Meis2
4xrm_B9e-16274332563Homeobox protein Meis2
5bng_A1e-15274332159Homeobox protein Meis2
5bng_B1e-15274332159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G137200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9642450.0EU964245.1 Zea mays clone 277285 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464082.20.0BEL1-like homeodomain protein 11
TrEMBLA0A1B6QIV30.0A0A1B6QIV3_SORBI; Uncharacterized protein
STRINGSb01g011970.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.12e-35BEL1-like homeodomain 11