PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G135400.1.p | ||||||||
Common Name | Sb01g011840, SORBIDRAFT_01g011840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 304aa MW: 32440 Da PI: 4.3198 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.8 | 1.1e-16 | 214 | 250 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Sobic.001G135400.1.p 214 CHNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 250 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.957 | 73 | 108 | IPR010399 | Tify domain |
SMART | SM00979 | 4.3E-10 | 73 | 108 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.5E-12 | 76 | 107 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.364 | 142 | 184 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-14 | 142 | 182 | IPR010402 | CCT domain |
SMART | SM00401 | 5.3E-11 | 208 | 261 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.71E-11 | 211 | 257 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.9E-14 | 213 | 252 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.53E-16 | 213 | 269 | No hit | No description |
Pfam | PF00320 | 2.5E-14 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 214 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MPDTDVDTEM REAAAAAAGA PAGDDDGEGD TEEEEEEDED DEDEVDEDDE EELPAAAPAP 60 TEEQPAPAPI SALPGNPNQL TLVFQGEVYV FESVTPEKVQ AVLLLLGRGE LPPGLAGMVL 120 PNQNENKGYD DILRRTDIPA KRVASLIRFR EKRKERNFDK KIRYAVRKEV ALRMQRRKGQ 180 FAGRASLEGE SPSPGFDPGS QGSGLDFASR ESKCHNCGTS EKMTPAMRRG PAGPRTLCNA 240 CGLMWANKGT LRSCPKAKVE SPVVAIEQGI SDNKALVTPS NDNVAASNGE ATIAAEIGVP 300 KAP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.8133 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G135400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT017762 | 0.0 | BT017762.1 Zea mays clone EL01N0501F08.c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464073.1 | 0.0 | GATA transcription factor 18 | ||||
Swissprot | Q10F25 | 1e-137 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | C5WPL5 | 0.0 | C5WPL5_SORBI; Uncharacterized protein | ||||
STRING | Sb01g011840.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-60 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G135400.1.p |
Entrez Gene | 8067268 |
Publications ? help Back to Top | |||
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