PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G118100.1.p
Common NameSb01g010420, SORBIDRAFT_01g010420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 421aa    MW: 45995 Da    PI: 6.5869
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G118100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071861339
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                          +r C+ + + +++++C  ++ +lC++C ++ H+        H+v
  Sobic.001G118100.1.p 18 ARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSAnplarrhHRV 61
                          578*****************************668888886655 PP
2CCT66.95.8e-23337380144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F KkirYe+RK++Ae+RpR+KGrFvk++
  Sobic.001G118100.1.p 337 REARVSRYREKRRTRLFAKKIRYEVRKVNAEKRPRMKGRFVKRT 380
                           9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.3E-91663IPR000315B-box-type zinc finger
PROSITE profilePS501199.7411663IPR000315B-box-type zinc finger
PfamPF006439.6E-61860IPR000315B-box-type zinc finger
CDDcd000218.47E-111963No hitNo description
PfamPF062038.7E-18337379IPR010402CCT domain
PROSITE profilePS5101716.003337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MTTSAGAAAG AALGARTARS CDGCMRRRAR WHCPADDAFL CQTCDVSVHS ANPLARRHHR  60
VRLPSASCSS PPCDPDAPTW LHGLKRRPRT PRSKPGGGKH EATTPNSMAA AASAAVPDLE  120
AEESGSGIVG DNDDHGFLVD DDEDLLYRVP VFDPMLAEFY NPVADEGEQK PLAEFYNLVA  180
DEGEQKPACL MPPLVETSPE FASGGLAEAD GLSGFDVPDM ELASFAADME SLLMGVHDGF  240
DDLGFLDEEK PQVNADAYLE AMAAPVPERE DKKRKRPEMI LKLNYDGVIA SWVRDGGSPW  300
FHGERPHLDP YELWSDFPAG SRGLLGGAVT AVTGGEREAR VSRYREKRRT RLFAKKIRYE  360
VRKVNAEKRP RMKGRFVKRT TLPPLPRPPP QQQQKQLPRA LPHVGMVLAP PPGANGRFQF  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18389LKRRPRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.111660.0shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G118100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9636770.0EU963677.1 Zea mays clone 265680 CCT motif family protein mRNA, complete cds.
GenBankKJ7278430.0KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466587.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLC5WN430.0C5WN43_SORBI; Uncharacterized protein
STRINGSb01g010420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-61B-box type zinc finger protein with CCT domain