PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G107400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 357aa    MW: 38549.5 Da    PI: 6.3197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G107400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12177224355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Sobic.001G107400.1.p 177 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 224
                           67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.809174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-17177242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-13179228No hitNo description
SMARTSM003536.1E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDHAVAAA LSTMPQQQQQ  60
QQPAVAAEHR PRKAAKVNTS WDSCITEQGS PADSSSPTIL SFGGHAAAAF AKPEPHPHQA  120
PSAAAYYGAA AAAAKAPKQE VLDAAALPFP AKRSYDDMAE AANKAPAATT RPASQNQDHI  180
LAERKRREKL SQRFIALSKI VPGLKKMDKA SVLGDAIKYV KQLQDQVKGL EDEARRRPVE  240
AAVLVKKSQL SADDDEGSSC DENFVGTDAS GTLPEIEARV SDRTVLVRIH CENRKGVLIA  300
ALSEIERLGL SIMNTNVLPF TTSSLDITIM AMAGDDFCLS VKDIVKKLNQ AFKSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13178233863Transcription factor MYC2
5gnj_B8e-13178233863Transcription factor MYC2
5gnj_E8e-13178233863Transcription factor MYC2
5gnj_F8e-13178233863Transcription factor MYC2
5gnj_G8e-13178233863Transcription factor MYC2
5gnj_I8e-13178233863Transcription factor MYC2
5gnj_M8e-13178233863Transcription factor MYC2
5gnj_N8e-13178233863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERKRRE
2183188RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.34010.0leaf| ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G107400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319991.10.0transcription factor bHLH18-like
SwissprotQ9T0725e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1B6QIC70.0A0A1B6QIC7_SORBI; Uncharacterized protein
STRINGSb01g009590.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein