PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G100100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 277aa    MW: 29625.7 Da    PI: 8.8764
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G100100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15172208135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Sobic.001G100100.1.p 172 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 208
                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.6E-73974IPR010399Tify domain
PROSITE profilePS5132014.1713974IPR010399Tify domain
PfamPF062001.2E-104173IPR010399Tify domain
PfamPF062031.6E-15101141IPR010402CCT domain
PROSITE profilePS5101713.473101143IPR010402CCT domain
SMARTSM004011.3E-10166220IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-10169225No hitNo description
Gene3DG3DSA:3.30.50.108.1E-14170210IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440172199IPR000679Zinc finger, GATA-type
PfamPF003203.9E-13172208IPR000679Zinc finger, GATA-type
CDDcd002021.16E-13172222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAEPAADDH GPRPPLADGA VAAGGGDASS AAAAAEALMS AASEQLTLVY QGDVFIFDPV  60
PPQKVQAVLL VLGGYEVPPG LVNMAVPTAN DEKNTTVAAR RVASLMRFRE KRKERCFDKR  120
IRYSVRKEVA QKMKRRKGQF AGRSDFGDGA TSSAACVCPT NGEDDHLRET HCQNCGISSR  180
LTPAMRRGPA GPRSLCNACG LMWANKGTLR SPLNAPKMTQ QQLANPSKMG DTDVKNSIVL  240
PVEYNQATVK TDSMMPKQEQ KLDTRPPTEE DIKAVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.94850.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G100100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582860.0EU958286.1 Zea mays clone 1683206 GATA transcription factor 25 mRNA, complete cds.
GenBankKU5128690.0KU512869.1 Zea mays TIFY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317311.10.0GATA transcription factor 19 isoform X2
SwissprotQ0DNU11e-131GAT19_ORYSJ; GATA transcription factor 19
TrEMBLC5WLV30.0C5WLV3_SORBI; Uncharacterized protein
STRINGGRMZM2G065896_P011e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.25e-55ZIM-LIKE 2