PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G095500.1.p
Common NameSb01g008550, SORBIDRAFT_01g008550
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 407aa    MW: 43617.8 Da    PI: 10.6866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31341399259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Sobic.001G095500.1.p 341 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 399
                           69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-17294338IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.1E-34328400IPR003657WRKY domain
PROSITE profilePS5081129.757335401IPR003657WRKY domain
SuperFamilySSF1182909.15E-27338399IPR003657WRKY domain
SMARTSM007742.5E-38340400IPR003657WRKY domain
PfamPF031069.1E-27342398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGPSSIQEME EARRTAVQSC HRVLALLSNP HGQLVPSKDL MAATGEAVAK FGSLTAKLTN  60
SNSNSNGNGL QLQGHARVRK IKKPLPIFDS NLFLESSAVA AAAAATVAKT PSPSPITGLQ  120
LFPRYHQMEG SSSKDPVRIP TQFPKRLLLE NPAAGLEGLP SKAPPVQMVQ PVSVAPPAGT  180
PTPALPAAHL HFLQQNQSYQ RFQLMHQMKI QNEMMKRSNL GDQGGSLSGG GGGKGVNLKF  240
DSSNCTASSS RSFLSSLSME GTLASLDGSR ASRPFQLVSG SQTSSTPEMG LVHRKRCAGR  300
EDGGGRCTTG SRCHCSKKRK LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP  360
RGYYKCSSVR GCPARKHVER CVDDPSMLIV TYEGDHNHNR VLAQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193383991272WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466480.10.0protein WRKY1
RefseqXP_021307146.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLC5X1950.0C5X195_SORBI; Uncharacterized protein
STRINGSb01g008550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-51WRKY DNA-binding protein 21