PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G078900.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

G2-like

Protein Properties

Length: 278aa MW: 29395.3 Da PI: 6.0522

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G078900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.5	6.4e-28	214	264	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQ Sobic.001G078900.2.p 214 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQ 264 68************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-24	211	264	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.767	211	271	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-13	212	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-22	214	265	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-6	216	264	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLDVGEIGM GLDLGLDLRL FAARTAGGMA AAAAKGAPAG IESCIRSLEE ERKKIEVFRR 60 ELPLCARLLA DVIDELKEEA AKRGGGDADA KADDGDKRKW MSTAQLWVDS EAKSDESDKE 120 HQSEITSPEP KLLGGAPMPI RAVAAVPPLP PPFFRREDSS AGTCLSLVSP ASKAPISPVA 180 TSDNASGRFC PTMPPSGSSG VTLHSQAQQQ ASRKARRCWS PELHRQFVAA LHQLGGPQVA 240 TPKQIREVMQ VDGLTNDEVK SHLQVSNDPL CPGISSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.889	1e-125	callus\| leaf\| ovary\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G078900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728055	0.0	KJ728055.1 Zea mays clone pUT6201 G2-like transcription factor (GLK44) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307622.1	0.0	transcription factor HHO5-like
TrEMBL	A0A1B6QHU6	0.0	A0A1B6QHU6_SORBI; Uncharacterized protein
STRING	Sb01g007130.1	1e-130	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G078900.2.p