PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G068301.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 483aa    MW: 52613.6 Da    PI: 12.5488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G068301.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12296338855
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + +r RdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Sobic.001G068301.1.p 296 ISQRGRDRINEKMRALQELIPHC-----NKTDKASILDETIEYLKSLQ 338
                           55677*****************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.246288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-14293352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16296347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9297338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-11298342No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MPCCGGRAAA TDLPHKSSPA CSLHGGGGRR RLRKASLLER SSTPFRRRGV LLRVLEILPR  60
WTAMRGRRRR IRRSPSSRTT TSSSCCGTTG ASSRSPRRTT GRRRRRRRRP PTATARLAPA  120
ASPARRPPRG SRTPSTTPSR RTCTRISGTA PSPTPPRNTR ARSWLPRSRR RRRRCRLGAA  180
ASSRAGPATS APPSAAATRC PGRRQGPAGR TLHCSRQGPA VPAGTTAHRR PVGLEATMGD  240
PGCQVTASMS TRGRGGVETT QIVRVRMPSV RRQLRRPNRR GDMGRNAGLV QLKFIISQRG  300
RDRINEKMRA LQELIPHCNK TDKASILDET IEYLKSLQMQ VQIMWMTSGM APMMFPGAHQ  360
FMPPMALGMN SGCIPAAQGL SQMPRLPYMN HPLPNHIPLN SSPAMNPLNA ANQMMQNGHL  420
REASNHFLHL DGRTAVVPQV PGPHVYGHQI AQAEEPNSIL EVAASTVVPT SRAGQPPSFD  480
GV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833RRRLRK
26471RGRRRRIR
396109RRTTGRRRRRRRRP
497106RTTGRRRRRR
5101108RRRRRRRR
6102108RRRRRRR
7168175RRRRRRCR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.18990.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G068301.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305561.10.0serine/arginine repetitive matrix protein 1 isoform X1
TrEMBLA0A1B6QHN10.0A0A1B6QHN1_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.18e-25phytochrome interacting factor 3-like 6