PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G066100.1.p | ||||||||
Common Name | Sb01g006020, SORBIDRAFT_01g006020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 390aa MW: 39856.9 Da PI: 9.5999 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.2 | 2e-36 | 66 | 191 | 2 | 126 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai +l+++ ++a ++ ++ a+ + +++ Sobic.001G066100.1.p 66 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASSAIEKLPEL-DPAA-FAaLPAPGDADAGGKDKQQ 152 689*************************************************************.4444.3333333333333334444 PP TCP 90 aaksaakskksqksaasalnlakesr..akarararert 126 + +++a s+ s++s+ s l+l+++ a a ar re t Sobic.001G066100.1.p 153 QGSKSAGSSTSETSKGSELSLSRSDGrgAGAAARDREVT 191 445555566666666666888884441466666666644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-34 | 67 | 196 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.592 | 68 | 126 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEASAVGDGA AGEGAAPAGR SQQGAKRGRG GAVRGSEADA AWGQPPMLPP PQAPGAGSRI 60 YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ DRLGFDQPSK AIEWLINAAS 120 SAIEKLPELD PAAFAALPAP GDADAGGKDK QQQGSKSAGS STSETSKGSE LSLSRSDGRG 180 AGAAARDREV TVASTSAQAA SFTELLTGVA SAGSITAAEH KQSWHQQPNV SAAAAADCVG 240 IANHGKGAHG LSTHTFSAPA AAKYGNAPPF GLVPAQPFNF TSPIEMPHFS LGQDTLAASS 300 PAAGDYSLNF SMSSGFLGAN RGTLQSNSQS NFSGHNHQHL QRLDGPILFG HAHAAAAAHP 360 ASENQLTASA ALQLWDGLRH SGMKEKSKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-25 | 73 | 127 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-25 | 73 | 127 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G066100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956595 | 0.0 | EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466344.1 | 0.0 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-109 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | C5WY77 | 0.0 | C5WY77_SORBI; Uncharacterized protein | ||||
STRING | Sb01g006020.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 2e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G066100.1.p |
Entrez Gene | 8083919 |