PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G062800.1.p | ||||||||
Common Name | Sb01g005700, SORBIDRAFT_01g005700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19091.7 Da PI: 8.4092 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.5 | 1.6e-36 | 20 | 120 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk +rrkC +dCvlapyfpa++p+++a+v+++FGasnv ++l++lp +er +a++++++eA+ r++dPvyG++g++ +lq +++ Sobic.001G062800.1.p 20 RCAACKNQRRKCGHDCVLAPYFPASDPQRYACVQRVFGASNVARMLQNLPVHERARAADTMAMEARRRVQDPVYGCAGIVGRLQGEIRA 108 6**************************************************************************************** PP DUF260 90 lkaelallkeel 101 ++ ela++++++ Sobic.001G062800.1.p 109 AQCELARTQAQI 120 *******99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-35 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSTSATNTEA AAASSSPGKR CAACKNQRRK CGHDCVLAPY FPASDPQRYA CVQRVFGASN 60 VARMLQNLPV HERARAADTM AMEARRRVQD PVYGCAGIVG RLQGEIRAAQ CELARTQAQI 120 AVHAAAAAVR ARPAPAVDAL AAGQHAPAAP LQQQDDDAAF QGLDALLIDD CRWDGLARLL 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-31 | 10 | 115 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-31 | 10 | 115 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G062800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466327.1 | 1e-126 | LOB domain-containing protein 24 | ||||
Swissprot | P59467 | 2e-40 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 2e-40 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | C5WY44 | 1e-125 | C5WY44_SORBI; Uncharacterized protein | ||||
STRING | Sb01g005700.1 | 1e-126 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-36 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G062800.1.p |
Entrez Gene | 8061193 |