PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G055400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 435aa    MW: 46088.7 Da    PI: 9.7952
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G055400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30361419259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d  ++++tYe++Hnh 
  Sobic.001G055400.1.p 361 ADNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDAAMLIVTYENDHNHA 419
                           69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-14326358IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-33348421IPR003657WRKY domain
PROSITE profilePS5081130.687355421IPR003657WRKY domain
SuperFamilySSF1182903.14E-26356421IPR003657WRKY domain
SMARTSM007744.5E-36360420IPR003657WRKY domain
PfamPF031069.5E-26362418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKAMEVVEEA NRAAVESCKK LVAVLSLSGA DAFRPLPVAA ETDEAVARFG KVVAVLSDRL  60
GHARARVAGK RSPPAPPVDA SCLLEYHPSL AVAPRHTTNG GHLLVSATSP PPPPPPPPTT  120
TTSLLASMTM RSAAEPMTMR SQKAEVVAPA VLVSPPCASN VTLTPAPAKK FDRSMFLETS  180
LLELNNSCSV PPSSSPAMAV QKSSPKVAAP NPCTSTPHIQ LQPTTQFQPP PQQQAAKKQK  240
SFQFDQTPSG EQFHIEVPVP LPRGAAPAAK EVISFSFDNN SVCTSSAATS FFTSISSQLI  300
SMSDAATSSA ARPATAKKMC GKGVEDGGGG VRCHCPKKKK PREKRVVRVP AISDKNADIP  360
ADNYSWRKYG QKPIKGSPHP RGYYRCSSKK DCPARKHVER CRSDAAMLIV TYENDHNHAQ  420
PLDPSVLTAA NAEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-193584211274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.77080.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G055400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3700431e-89AK370043.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2104B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318758.10.0protein WRKY1
TrEMBLA0A1B6QHF90.0A0A1B6QHF9_SORBI; Uncharacterized protein
STRINGSb01g005070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Representative plantOGRP1390644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-37WRKY DNA-binding protein 7