PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G049800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

HB-other

Protein Properties

Length: 1148aa MW: 129114 Da PI: 7.2862

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G049800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43	7.7e-14	23	72	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++q++ Le+++ +yp+ ee+ e A+ +gLt +qV++WF+ rR ke++ Sobic.001G049800.1.p 23 SPQQIQMLEKFYSDAQYPKPEEMGEYATCVGLTYSQVRIWFKERRRKERR 72 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.511	13	73	IPR001356	Homeobox domain
SMART	SM00389	3.6E-12	14	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-13	19	77	IPR009057	Homeodomain-like
CDD	cd00086	1.43E-7	21	63	No hit	No description
Pfam	PF00046	3.9E-11	23	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-14	23	73	IPR009057	Homeodomain-like
SMART	SM00571	2.6E-5	384	443	IPR018501	DDT domain
PROSITE profile	PS50827	10.218	384	443	IPR018501	DDT domain
Pfam	PF02791	7.1E-7	386	438	IPR018501	DDT domain
Pfam	PF15612	1.2E-5	660	691	IPR028942	WHIM1 domain
Pfam	PF15613	2.0E-11	779	850	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1148 aa Download sequence Send to blast
MPRAQMVTHG LGAKRDNAGA KKSPQQIQML EKFYSDAQYP KPEEMGEYAT CVGLTYSQVR 60 IWFKERRRKE RREMGAIGSQ MERQFRARST GPRSSSSSSS CNQAPTYGIS RSQSELDTWG 120 MSTAGEESNI ISQVLFPKDY ILSKIFRKDG PPLGSEFDPL PQSAHGCNRE AKCHRSSENQ 180 RTVKKRKIME STTTNQRSDV YEDTAPVRKH GIGKGLMTVW HAMYSHNMKC QSGPNFIDET 240 GCLRSLRPFD DFDGLEDRDN GRKTQNQGMT RKKIVKRSKV LANRKKVPCK RVSGPKVHPP 300 MDCHLSVDKS ESSELQTELV NLVDDEELEL SELQAGPNPL RCSAHLSSSG RHDCPLCKDL 360 LAKFPPQSLK MKRLFSTKPW ESSPEMVKKL FQVIRFVYTH FGSVDVHPFT FDEFVQAFHD 420 KDSLLLGEVH VGLLKLLLLK AEMGSDGVFV PRSSKDCRFL SFLNFVREQE FDANVWIRSL 480 NALTWVEILR QVLVASGFGP NQHLLNQEFF NKEKNQMVKY GLRPRTLKGE LFALLSKAGS 540 CGLKVSVLAK SSEIIDLNVS SPLELEQLIS LALSSDITLF EKIAPSAYRL RVDPQIKGEE 600 DSILDSDDSG SVDDDEDTSR SDDGSQKFKF PENESRLARR KEKNAHESPN KCSEIDESYS 660 GERWLLALME GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQRVLHN VPRVHPPQSG 720 GKIKKLTKNL CQYSDESLNG SGSLDCCHQG RPGRRKNQDY TADPGRNDLP VAAHEPQVVL 780 LGSDRRYNSY WLFLGPCRED DPGHRRVYFE SSEDGHWEVI DSPQELLSLL SVLDSRGTRE 840 AHLLTSMEKR QACLFEAMKK HVEGGKAARL PAPFDSYCSQ TSSGDGASPK TSSVDGASPV 900 SDIENTAVPT CLKDSNFDSS SAIVIESGRR GDEKISMWER LQAFDKWIWT SFYSILTAVK 960 SGKKSFKESL VHCESCHDLY WRDEKHCRIC HSTFEVGFDL EEKYAVHVAT CREPELSHEV 1020 PNHKFLPSQL QALKAAIHAI EASMPEAAFT GSWMKSAHKL WVKRLRRTSS LPELLQVLVD 1080 FVGAMDVDWL YKSSSSTRFR TYLDDIIVYF QTMPQTTSAV ALWVVQLDAL VAPYLDKAMT 1140 GQQACAR*

Sequence ? help Back to Top

Protein Sequence Length: 1148 aa Download sequence Send to blast

MPRAQMVTHG LGAKRDNAGA KKSPQQIQML EKFYSDAQYP KPEEMGEYAT CVGLTYSQVR  60
IWFKERRRKE RREMGAIGSQ MERQFRARST GPRSSSSSSS CNQAPTYGIS RSQSELDTWG  120
MSTAGEESNI ISQVLFPKDY ILSKIFRKDG PPLGSEFDPL PQSAHGCNRE AKCHRSSENQ  180
RTVKKRKIME STTTNQRSDV YEDTAPVRKH GIGKGLMTVW HAMYSHNMKC QSGPNFIDET  240
GCLRSLRPFD DFDGLEDRDN GRKTQNQGMT RKKIVKRSKV LANRKKVPCK RVSGPKVHPP  300
MDCHLSVDKS ESSELQTELV NLVDDEELEL SELQAGPNPL RCSAHLSSSG RHDCPLCKDL  360
LAKFPPQSLK MKRLFSTKPW ESSPEMVKKL FQVIRFVYTH FGSVDVHPFT FDEFVQAFHD  420
KDSLLLGEVH VGLLKLLLLK AEMGSDGVFV PRSSKDCRFL SFLNFVREQE FDANVWIRSL  480
NALTWVEILR QVLVASGFGP NQHLLNQEFF NKEKNQMVKY GLRPRTLKGE LFALLSKAGS  540
CGLKVSVLAK SSEIIDLNVS SPLELEQLIS LALSSDITLF EKIAPSAYRL RVDPQIKGEE  600
DSILDSDDSG SVDDDEDTSR SDDGSQKFKF PENESRLARR KEKNAHESPN KCSEIDESYS  660
GERWLLALME GEYSDLSIDE KLDCLVALID VVSGAGSVPR LEEPQRVLHN VPRVHPPQSG  720
GKIKKLTKNL CQYSDESLNG SGSLDCCHQG RPGRRKNQDY TADPGRNDLP VAAHEPQVVL  780
LGSDRRYNSY WLFLGPCRED DPGHRRVYFE SSEDGHWEVI DSPQELLSLL SVLDSRGTRE  840
AHLLTSMEKR QACLFEAMKK HVEGGKAARL PAPFDSYCSQ TSSGDGASPK TSSVDGASPV  900
SDIENTAVPT CLKDSNFDSS SAIVIESGRR GDEKISMWER LQAFDKWIWT SFYSILTAVK  960
SGKKSFKESL VHCESCHDLY WRDEKHCRIC HSTFEVGFDL EEKYAVHVAT CREPELSHEV  1020
PNHKFLPSQL QALKAAIHAI EASMPEAAFT GSWMKSAHKL WVKRLRRTSS LPELLQVLVD  1080
FVGAMDVDWL YKSSSSTRFR TYLDDIIVYF QTMPQTTSAV ALWVVQLDAL VAPYLDKAMT  1140
GQQACAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G049800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ887167	0.0	JQ887167.1 Zea mays isolate 5003 clone 1 GRMZM2G454176-like gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021306508.1	0.0	homeobox-DDT domain protein RLT3
TrEMBL	C5WW77	0.0	C5WW77_SORBI; Uncharacterized protein
STRING	Si033977m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50
Representative plant	OGRP9161	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.001G049800.1.p