PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G039800.1.p
Common NameSb01g003670, SORBIDRAFT_01g003670
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 241aa    MW: 25870.3 Da    PI: 10.8843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G039800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-1981130255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +grW+AeIrdp     +  +r +lg+f taeeAa a++aa  +++g
  Sobic.001G039800.1.p  81 RFRGVRRRP-WGRWAAEIRDP-----HsrRRLWLGTFNTAEEAANAYDAANIRFRG 130
                           69*******.**********7.....335*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-2981139IPR001471AP2/ERF domain
PROSITE profilePS5103224.43481138IPR001471AP2/ERF domain
SMARTSM003802.7E-3381144IPR001471AP2/ERF domain
CDDcd000181.81E-3081140No hitNo description
PfamPF008473.4E-1381130IPR001471AP2/ERF domain
PRINTSPR003672.1E-108293IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2182139IPR016177DNA-binding domain
PRINTSPR003672.1E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGTNPLLQEL AAVVVAAADS EPPRPRPRVV RILVHDADAT DSSSSEDEAR PPPRRRARGG  60
NSSVGVRRHV MEPAGASSSV RFRGVRRRPW GRWAAEIRDP HSRRRLWLGT FNTAEEAANA  120
YDAANIRFRG ASAPTNFPAA SYSPPPEPAK PIISLTPEPG KVITLPPVPV KQTFPLQVKE  180
EGGSRDGQVK GGSSEVKALP PKRVWEMIPS KRQKYPGCAD GSGLRAIHAA SLYVEEVGGA  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17811381472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.35760.0callus| leaf| ovary
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G039800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609290.0BT060929.1 Zea mays full-length cDNA clone ZM_BFb0072L15 mRNA, complete cds.
GenBankJX4699170.0JX469917.1 Zea mays subsp. mays clone UT3173 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463655.11e-171ethylene-responsive transcription factor CRF4
SwissprotQ9SUE32e-28CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLC5WV631e-170C5WV63_SORBI; Uncharacterized protein
STRINGSb01g003670.11e-171(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-08ERF domain protein 10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]