PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G033200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 652aa MW: 73395 Da PI: 7.3416 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 374.3 | 1.5e-114 | 280 | 649 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 ++lL++cA+a + +d+++ ++ L+++++++s +gd+ qRla+yf+ +L+arla+++s++y++l++++ts + + l+a++l+++++P+ Sobic.001G033200.3.p 280 TTLLIHCAQAAAIDDHRNSSEHLKQIRKHSSATGDAGQRLAHYFADGLEARLAGTGSSIYRSLAAKRTS---TGDMLKAFNLYVKACPF 365 689************************************************************999999...899************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 +sh +aN +Il+a+++ +r+HiiD++i++G+QWp L+q L++R++gpp+lRiTg++ p sg +e++e+tg+rL+++A+ ++vpfe Sobic.001G033200.3.p 366 RIISHYVANTTILNATKSVTRLHIIDYGIMYGFQWPILMQRLSKRSGGPPTLRITGIDFPLSGfrPAERVEATGRRLHEYARMFNVPFE 454 ************************************************************99999************************ PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +++ +a +++++++++L++k++E ++Vn+ +++ +++de+++ +s+r++vL+++++l+P+++v+ + +n++ F++rf ea+ ++s+ Sobic.001G033200.3.p 455 YQA-IAAKWDTIQVKDLNIKSDEFIVVNCLYRMRNMMDETATDDSPRTRVLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSS 542 ***.799********************************************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +fd+lea+++r +e+r +Ere++gre+ nv+aceg+er+er et+++W++r +aGF+++pl+ ++++ a++ ++k++ + + v+e++ Sobic.001G033200.3.p 543 IFDMLEANASRMDEHRLLIEREFFGREAINVIACEGTERIERPETYKQWQMRNLRAGFRQLPLDREIMARARYKVSKTYPRDFLVDEDN 631 *******************************************************************************888******* PP GRAS 356 gslvlgWkdrpLvsvSaW 373 +++++gWk+r ++++SaW Sobic.001G033200.3.p 632 KWMLQGWKGRVIYALSAW 649 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.735 | 253 | 630 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-112 | 280 | 649 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MIMDPRPRDN LNFGARLPTP NPPTPHMISF SLQQPQPQFF PSYGFHSHNH NNPAISSHPS 60 PPSVMPGCTT PSPASTTTTE ADNAEDLSEA VADDAVLAYI NQFLLEDEDE ESYPVTSVPV 120 EDSVLLAAVE KPFVDILKSA NHITAKAYEV KSWITDDCHS TGSGRFHDVV TSTLDSTQLA 180 PEMVQGDVVD AVHKGQKNPR DNDLEVERRK SKQSALCDEE TVREMFDKVL LCTDKNCAFH 240 SPMPADAQNS GGYVKGSGNR RGRRKGRSGA GAEQEPVDLT TLLIHCAQAA AIDDHRNSSE 300 HLKQIRKHSS ATGDAGQRLA HYFADGLEAR LAGTGSSIYR SLAAKRTSTG DMLKAFNLYV 360 KACPFRIISH YVANTTILNA TKSVTRLHII DYGIMYGFQW PILMQRLSKR SGGPPTLRIT 420 GIDFPLSGFR PAERVEATGR RLHEYARMFN VPFEYQAIAA KWDTIQVKDL NIKSDEFIVV 480 NCLYRMRNMM DETATDDSPR TRVLNTIRKL NPHLFVHGIV NGTYNAPFFV TRFKEAMFFF 540 SSIFDMLEAN ASRMDEHRLL IEREFFGREA INVIACEGTE RIERPETYKQ WQMRNLRAGF 600 RQLPLDREIM ARARYKVSKT YPRDFLVDED NKWMLQGWKG RVIYALSAWS T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-52 | 283 | 649 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.6422 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G033200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184908 | 0.0 | KF184908.1 Saccharum hybrid cultivar R570 clone BAC 006C11 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466184.2 | 0.0 | scarecrow-like protein 30 | ||||
Refseq | XP_021306618.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 1e-169 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1B6QH73 | 0.0 | A0A1B6QH73_SORBI; Uncharacterized protein | ||||
STRING | Sb01g003110.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13841 | 25 | 29 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-169 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G033200.3.p |
Publications ? help Back to Top | |||
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