PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G020200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 397aa    MW: 42345.3 Da    PI: 5.4036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G020200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-07155177123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ Cgk F+r  nL+ H+r H
  Sobic.001G020200.1.p 155 HSCKVCGKGFKRDANLRMHMRGH 177
                           79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-5153180No hitNo description
SMARTSM003550.0017155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321155182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6155181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SMARTSM0035544203236IPR015880Zinc finger, C2H2-like
SMARTSM0035527241263IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEVCNLGNNA MEAQQQREQS QAGGCTDDDP AAVLTCLTFL EQKIAHLRAI IGAAPRPPRQ  60
MVSAELSCIA VQLVSISKSL AATGGGGAAA ADQDDGAARS PAPNDGDSDS SDHDLLHAED  120
DYGDGDGDSD GRMPPAGSYE VIELGKEEIL APHVHSCKVC GKGFKRDANL RMHMRGHGEE  180
YKTAAALAKP ASAPSSSLAR CFYSCPFVGC KRNREHRSFQ PLKTAVCVKN HYRRSHCDKS  240
YTCRRCNVKR FSVLADLRTH EKHCGRDRWV CSCGTSFSRK DKLFGHVAAF DGHAPALPPE  300
DDDAVTNAVG LGTGSGRLTT MDTEAVSRMA SMEFFPDAVL DGLVCSDIKG FALMDGGQGQ  360
YLEDDDGRGS LSPLPMGLDS CDFDGFDLFG APAIDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G020200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666231e-129AK366623.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A04.
GenBankAK3667081e-129AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466130.20.0zinc finger protein STOP1 homolog
TrEMBLA0A1B6QH060.0A0A1B6QH06_SORBI; Uncharacterized protein
STRINGSb01g001950.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-85C2H2 family protein