PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G009200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 435aa    MW: 45841 Da    PI: 11.3824
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G009200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.32.1e-10329418998
                 NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                           q   a+d+   ++P+ar+++++++++   ++s++a  l+ ka e+f+ +++  ++ +a + +++++   ++++av + +  +fl + vp
  Sobic.001G009200.1.p 329 QKAAAADMGVCSFPMARVRQLMRVEDATIRVSSDAVFLINKASEFFLGKFAEDAYRNAVKDRKKSIIYDNLSTAVCSQKGLKFLSEFVP 417
                           566778888999**************************************************************************999 PP

                 NF-YC  98 r 98 
                           +
  Sobic.001G009200.1.p 418 Q 418
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.48E-15339418IPR009072Histone-fold
PfamPF008083.0E-12340403IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.5E-17341418IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAGKKPTPVK PAAPSTQRNG SAAPGSKSRP KQASEEAAAA SAKAQSASKP RKITKEKPAA  60
AKKKRDKPEP QVGGKRKKQQ ASADAATPAK KRKKGGEGPE PKPQKEATPA KKHKPSGKPE  120
KPATPGKKQK PAVKPATPAK KQQPAGKSPT PAKKQKPAGK PATPSKKQQS TGKPATPAKK  180
QQSTGKPATP AKKQQSPGKA ATPAKKQQSP GKAATPAKKQ QSPGKPATPA KKHQSPGRAE  240
KPTPKKKHQS PGKAEKPTPK KQQSPGKARK PAAGATSLPK KQAKHEKPTP TKRKRGDDAP  300
QKEAKSPKRA PADGEVHAST PVKKKRKDQK AAAADMGVCS FPMARVRQLM RVEDATIRVS  360
SDAVFLINKA SEFFLGKFAE DAYRNAVKDR KKSIIYDNLS TAVCSQKGLK FLSEFVPQRV  420
AAEDALKAMA GNNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17593RKKQQASADAATPAKKRKK
28894AKKRKKG
38993KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G009200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849680.0KF184968.1 Saccharum hybrid cultivar R570 clone BAC 261M16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307478.10.0muscle M-line assembly protein unc-89
TrEMBLA0A1B6QGR20.0A0A1B6QGR2_SORBI; Uncharacterized protein
STRINGSb01g000900.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Representative plantOGRP86701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-22nuclear factor Y, subunit C10