PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G007200.3.p
Common NameSb01g000730, SORBIDRAFT_01g000730
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 528aa    MW: 56989.7 Da    PI: 4.7611
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G007200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35491402102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d+++++++sw   +nsf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Sobic.001G007200.3.p  49 FLMKTYEMVDDPATDDVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 128
                           9*********************99*****************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i+r+k 
  Sobic.001G007200.3.p 129 KHLLKTINRRKP 140
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.1E-6245138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-3645138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.5E-3946138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MQGGVVAHAA AAAAAASTVT TAVAPPVPAH AAVVGNGGGP AAAAPPPPFL MKTYEMVDDP  60
ATDDVVSWGP GNNSFIVWNT PEFARDLLPK YFKHSNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFLRGQKH LLKTINRRKP SLQGNSQPQQ PQLQNAPVPS CVEVGKFGLE EEIERLKRDK  180
NVLMQELVRL RQQQQTTDHQ LQTLGKRLQG MESRQQQMMS FLAKAMQSPG FLAQFVQQNE  240
NSRRRIVAAN KKRRLPKQDG GLDSESAAAS LDGQIIKYQP LINEAAKAML RKILKLDSSH  300
RFESMGNSDN NNFLLENYMP AAQAFESSSS TRNSGVTLAE VPANSGLPYV SASSGLSAIC  360
SPSVAPEIQC PVVLDNKLSN QVPNMSAVPP VSNPITAGSS DISIPEFSDL ADLVNEDSVN  420
IPGGAFEMPG PEFPLPEGDD SVPIETDETM YNNDETQSLP GIIDSFWEQF LVGSPLSADN  480
DEVDSGGLDA RGSPQENGWS KVGNISNLTE QMGLLSSTNH RDSGNGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-273913817129Heat shock factor protein 1
5d5v_B3e-273913817129Heat shock factor protein 1
5d5v_D3e-273913817129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.97150.0embryo| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G007200.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847250.0KF184725.1 Saccharum hybrid cultivar R570 clone BAC 133K20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466076.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLC5WRZ80.0C5WRZ8_SORBI; Uncharacterized protein
STRINGSb01g000730.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-120heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]