PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_75077.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 101aa MW: 11312.1 Da PI: 5.5956 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 58.4 | 1.5e-18 | 1 | 100 | 126 | 217 |
GRAS 126 paLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...gEal 202 p+L++a+as+ + pp l++T+v+sp+s+ + ++ee+g++L +fA++ +++++f+++ +++ +++l l++Lr+ + +Eal Rsa1.0_75077.1_g00001.1 1 PTLIDAMASKLNTPPLLKLTVVSSPSSFpplINISYEELGSKLVNFATTRNIEMQFTIIpstYSDGFSSL-LQHLRIYStsyNEAL 85 79*************************999999*************************988666677777.99999888889**** PP GRAS 203 aVnlvlqlhrlldes 217 +Vn++++l +++de+ Rsa1.0_75077.1_g00001.1 86 VVNCHMMLRYIPDET 100 ***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.939 | 1 | 101 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-16 | 1 | 100 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
PTLIDAMASK LNTPPLLKLT VVSSPSSFPP LINISYEELG SKLVNFATTR NIEMQFTIIP 60 STYSDGFSSL LQHLRIYSTS YNEALVVNCH MMLRYIPDET L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_75077.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437964.1 | 2e-65 | PREDICTED: scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 6e-54 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A397XZB3 | 7e-59 | A0A397XZB3_BRACM; Uncharacterized protein | ||||
STRING | Bra036041.1-P | 6e-58 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5445 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 2e-56 | GRAS family protein |