PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_71658.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 70aa    MW: 7610.59 Da    PI: 9.0629
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_71658.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-091181027
                             GGTS--TTTTT-SS-SSS CS
                  zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                             +rtG Ck+G++Ck++H++
  Rsa1.0_71658.1_g00001.1  1 MRTGDCKFGASCKYHHPR 18
                             8***************96 PP
2zf-CCCH42.61e-134570126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             +++++C++++rtG+Ck+G++CkF+H+
  Rsa1.0_71658.1_g00001.1 45 PGEKECPYYMRTGQCKFGSTCKFHHP 70
                             57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035653118IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.122119IPR000571Zinc finger, CCCH-type
SMARTSM003560.0124470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0474470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-74569IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-114670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-55069IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MRTGDCKFGA SCKYHHPRQG SGGGGGGDSV TSPISFNHMG FPLRPGEKEC PYYMRTGQCK  60
FGSTCKFHHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_71658.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131673.17e-39PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X1
SwissprotQ6NPN32e-32C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM4CQH62e-37M4CQH6_BRARP; Uncharacterized protein
STRINGBra006465.1-P3e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2124855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-31C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]