PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_70520.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 106aa    MW: 11710.1 Da    PI: 4.9277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_70520.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22e-202722195
                             HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                             +f++++g++++++ +++l++e+grsW+++l+  ++ gr  +t+GW++F++angLk+gD ++Fkl++r  +  +v 
  Rsa1.0_70520.1_g00001.1  2 SFVRANGLETRCG-EIVLMNEKGRSWTLTLK-PRQCGRSRITGGWRGFCSANGLKAGDLFTFKLIKRGAT--LVL 72
                             7999***999887.****************4.44445589************************996444..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.947177IPR003340B3 DNA binding domain
SMARTSM010192.1E-11178IPR003340B3 DNA binding domain
CDDcd100172.54E-22274No hitNo description
PfamPF023621.6E-18273IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-17276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18275IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MSFVRANGLE TRCGEIVLMN EKGRSWTLTL KPRQCGRSRI TGGWRGFCSA NGLKAGDLFT  60
FKLIKRGATL VLLLKSPSQQ EDEGSEADEE IESLSTESDS HDEESN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_70520.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894331e-98AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475755.14e-69PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM41e-30REM14_ARATH; B3 domain-containing protein REM14
TrEMBLM4E2554e-49M4E255_BRARP; Uncharacterized protein
STRINGBra022855.1-P6e-50(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-26B3 family protein