PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_68451.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 92aa MW: 10304.4 Da PI: 4.9276 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33 | 1.1e-10 | 2 | 36 | 63 | 98 |
TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +GWk+F++angLk+gD++++kl++ +++++v++++ Rsa1.0_68451.1_g00001.1 2 GGWKDFAEANGLKTGDSFTLKLIW-EDTTPVLSLCP 36 7***********************.88889999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.701 | 1 | 38 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-8 | 2 | 38 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.9E-9 | 2 | 36 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.42E-9 | 2 | 36 | No hit | No description |
SuperFamily | SSF101936 | 6.28E-10 | 2 | 41 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
EGGWKDFAEA NGLKTGDSFT LKLIWEDTTP VLSLCPEECS FDSGQGGCSE TIQKKSSPPI 60 ERSNCGKVIK ERNNRENDSK EQTRPMEKEK NH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_68451.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433753.1 | 1e-52 | PREDICTED: B3 domain-containing protein REM13-like | ||||
Swissprot | P0CAP5 | 3e-25 | REM13_ARATH; B3 domain-containing protein REM13 | ||||
TrEMBL | V4NJI6 | 5e-28 | V4NJI6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405008.1 | 8e-29 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24650.1 | 1e-27 | DNA binding;DNA binding;sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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