PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_56238.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 74aa MW: 8130.92 Da PI: 9.0996 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 23.1 | 1.4e-07 | 28 | 52 | 2 | 26 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 ek++sl+ l+++Fs+++kdAAk+Lg Rsa1.0_56238.1_g00001.1 28 EKSVSLSLLQQHFSGSLKDAAKSLG 52 799*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02042 | 2.4E-6 | 31 | 52 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
NSSTGSQATF EQDMSKARTP EKKRNSTEKS VSLSLLQQHF SGSLKDAAKS LGGDLSHYTK 60 KDMQTTWDHE VAVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_56238.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434817.1 | 1e-25 | PREDICTED: protein NLP8-like | ||||
Swissprot | O22864 | 2e-21 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | M4CKN2 | 4e-21 | M4CKN2_BRARP; Uncharacterized protein | ||||
STRING | Bra004767.1-P | 7e-22 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 9e-24 | Nin-like family protein |
Publications ? help Back to Top | |||
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