PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_55877.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 104aa    MW: 12432.5 Da    PI: 9.9865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_55877.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.62.3e-4011044109
                      NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                              GfrFhPtdeel+v+yL++kve+k+++l e ik++diyk++PwdLp+  + + kewyfF+ r +ky+++ r+nr+t+sg+Wkatg d
  Rsa1.0_55877.1_g00001.1   1 GFRFHPTDEELLVYYLRRKVENKPIKL-ELIKQIDIYKFDPWDLPRVSSVGAKEWYFFCMRGRKYKNSVRPNRVTDSGFWKATGID 85 
                              9**************************.99***************77777999********************************* PP

                      NAM  90 kevlskkgelvglkktLvfy 109
                              k+v+s +   vglkk+Lv+y
  Rsa1.0_55877.1_g00001.1  86 KPVYS-NLDCVGLKKSLVYY 104
                              *****.9999*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023656.8E-191104IPR003441NAC domain
PROSITE profilePS5100540.5361104IPR003441NAC domain
SuperFamilySSF1019416.15E-411104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
GFRFHPTDEE LLVYYLRRKV ENKPIKLELI KQIDIYKFDP WDLPRVSSVG AKEWYFFCMR  60
GRKYKNSVRP NRVTDSGFWK ATGIDKPVYS NLDCVGLKKS LVYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-38110418121Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_55877.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756691e-110KM975669.1 Brassica napus NAC transcription factor 42.1 (NAC42.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481287.12e-69PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-67NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D3B6F45e-68A0A0D3B6F4_BRAOL; Uncharacterized protein
STRINGBo3g036290.19e-69(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-69NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]