PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_51893.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 144aa    MW: 16724.7 Da    PI: 10.9381
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_51893.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind34.84.3e-111396291
                             HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
                             F  +ly++++d++ + +isws +n++sfvv+d ++++  +L++     + +++F  +L   gF++v++  +         eF+h+ F 
  Rsa1.0_51893.1_g00001.1 13 FFLQLYQVVDDRSSDPIISWSkSNNHSFVVWDLKKLHI-LLKSsSVLGRTLTAFWVKLSSNGFRSVEKGPRV-------FEFEHDDFA 92
                             8999*****************8899***********99.665427788899***************998865.......********* PP

                             XXXX CS
             HSF_DNA-bind 88 kgkk 91
                             +g+ 
  Rsa1.0_51893.1_g00001.1 93 RGTL 96
                             9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-12895IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-69103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.07E-91095IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-81396IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVRKLPTRSS SSFFLQLYQV VDDRSSDPII SWSKSNNHSF VVWDLKKLHI LLKSSSVLGR  60
TLTAFWVKLS SNGFRSVEKG PRVFEFEHDD FARGTLMKKM MVKPLSERIE TEKMMVKALS  120
ERIERFDAQI KIIKCRLKAK KASL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_51893.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481369.12e-99PREDICTED: heat stress transcription factor A-6a-like
TrEMBLA0A078HHE28e-58A0A078HHE2_BRANA; BnaC04g32170D protein
TrEMBLA0A0D3C0168e-58A0A0D3C016_BRAOL; Uncharacterized protein
STRINGBo4g139630.11e-58(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.18e-17Winged helix-turn-helix transcription repressor DNA-binding