PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_49027.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 64aa    MW: 7057.39 Da    PI: 10.5503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_49027.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.95.5e-104564221
                             --SS-EEEEEEE--TT-SS- CS
                     WRKY  2 dDgynWrKYGqKevkgsefp 21
                             +D ++WrKYGqK++kgs++p
  Rsa1.0_49027.1_g00001.1 45 SDLWAWRKYGQKPIKGSPYP 64
                             699***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-83764IPR003657WRKY domain
PROSITE profilePS5081112.6913964IPR003657WRKY domain
SuperFamilySSF1182903.14E-74264IPR003657WRKY domain
PfamPF031062.2E-54664IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MEFIMPHAIT LLTKLTNMKG QGKKVVCIPA PAAMNSRSSG EVVPSDLWAW RKYGQKPIKG  60
SPYP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_49027.1_g00001.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121674e-63FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds.
GenBankKC2465784e-63KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481188.15e-26PREDICTED: probable WRKY transcription factor 35
SwissprotO647472e-24WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0A7RI831e-23A0A0A7RI83_BRAOC; WRKY53 protein
TrEMBLA0A0D3C4761e-23A0A0D3C476_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D2T91e-23A0A3P6D2T9_BRAOL; Uncharacterized protein
STRINGBo4g182940.12e-24(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-26WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]