PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_47639.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 122aa MW: 13771.7 Da PI: 10.0176 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.9 | 4.1e-09 | 37 | 81 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P a +Kl+ ae+ e A +Y+k Lq Rsa1.0_47639.1_g00001.1 37 SIAARERRRRIADKTHELTKLIPGA-----QKLNTAEMFEAAAKYVKFLQ 81 677899******************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-11 | 23 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.417 | 31 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-11 | 34 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-7 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 37 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
SIFPNFQVPD FPLEFKVGRG DEDRGHDTKK PSLSSQSIAA RERRRRIADK THELTKLIPG 60 AQKLNTAEMF EAAAKYVKFL QSQVGILQMM QTTTKTHISD VEIKTRVLLG SQAIQEKLST 120 DE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_47639.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018466572.1 | 1e-69 | PREDICTED: transcription factor bHLH53-like | ||||
Swissprot | Q84RD0 | 1e-44 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | A0A078JNX8 | 1e-61 | A0A078JNX8_BRANA; BnaAnng24240D protein (Fragment) | ||||
TrEMBL | A0A397ZC29 | 3e-61 | A0A397ZC29_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CMF1 | 3e-61 | M4CMF1_BRARP; Uncharacterized protein | ||||
STRING | Bra005389.1-P | 5e-62 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 5e-46 | bHLH family protein |
Publications ? help Back to Top | |||
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