PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_31285.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HRT-like
Protein Properties Length: 185aa    MW: 21022.3 Da    PI: 9.9848
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_31285.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like27.94.1e-091161631
                 HRT-like 16 PvkgRKRCeeHKGmRi 31
                             PvkgRKRC eHKG+Ri
  Rsa1.0_31285.1_g00001.1  1 PVKGRKRCIEHKGQRI 16
                             9**************7 PP
2HRT-like48.21.9e-154675231
                 HRT-like  2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31
                             CGvil +  +C++ Pv+gRKRCe HKGmRi
  Rsa1.0_31285.1_g00001.1 46 CGVILPNIEPCSKRPVPGRKRCEDHKGMRI 75
                             *****************************7 PP
3HRT-like28.91.9e-09109135228
                 HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                              C +++++G +C+r+  +g KRC++HK 
  Rsa1.0_31285.1_g00001.1 109 CEATTRNGVPCTRSSPRGSKRCWQHKE 135
                              99************************7 PP
4HRT-like573.3e-18150179231
                 HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              CGv+  dG vC+r+PvkgRKRCeeHKGmR+
  Rsa1.0_31285.1_g00001.1 150 CGVKVFDGLVCERSPVKGRKRCEEHKGMRV 179
                              *****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
PVKGRKRCIE HKGQRICRVS PVKPQQPETF ITRRQDCNTD VVTTCCGVIL PNIEPCSKRP  60
VPGRKRCEDH KGMRINAFLF LLNRTDREKT VKDANKSEEE EEASKPSFCE ATTRNGVPCT  120
RSSPRGSKRC WQHKEKENIH PVVAGTQERC GVKVFDGLVC ERSPVKGRKR CEEHKGMRVL  180
IIPSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_31285.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466711.11e-118PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like, partial
SwissprotF4K9332e-77ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLM4CK251e-104M4CK25_BRARP; Uncharacterized protein
STRINGBra004559.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-77effector of transcription2