PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_30273.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 87aa MW: 9738.95 Da PI: 4.4342 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.2e-16 | 13 | 87 | 1 | 81 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffkv+ + ++s + +p +f e+ + + ++t +l+ g +W+v + +k ++ ++t+GW++F+++++Lk+g+f++ Rsa1.0_30273.1_g00001.1 13 FFKVF--LSETASESMAIPMSFSEHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRDCAYFTSGWSKFAEDHELKDGEFLT 87 89999..666777779******9655655..899****************..99998899*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.12E-19 | 7 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-18 | 9 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.365 | 11 | 87 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.82E-17 | 11 | 87 | No hit | No description |
SMART | SM01019 | 3.9E-5 | 13 | 85 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 13 | 87 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSGSEEDVDL PRFFKVFLSE TASESMAIPM SFSEHLQDPL PQTAKLQGIG GGVWTVSFKK 60 IRDCAYFTSG WSKFAEDHEL KDGEFLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-15 | 3 | 86 | 1 | 84 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_30273.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189222 | 1e-76 | AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442734.1 | 3e-57 | PREDICTED: B3 domain-containing protein REM20-like isoform X1 | ||||
Refseq | XP_018442735.1 | 3e-57 | PREDICTED: B3 domain-containing protein REM20-like isoform X2 | ||||
Swissprot | Q8LAV5 | 1e-31 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | A0A078I9I2 | 3e-54 | A0A078I9I2_BRANA; BnaC03g16210D protein | ||||
TrEMBL | A0A0D3B418 | 5e-54 | A0A0D3B418_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A0D3CTK8 | 7e-54 | A0A0D3CTK8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H7B4 | 7e-54 | A0A3P6H7B4_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g023970.1 | 9e-55 | (Brassica oleracea) | ||||
STRING | Bo6g067300.1 | 1e-54 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 5e-34 | B3 family protein |
Publications ? help Back to Top | |||
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