PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_28828.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 148aa    MW: 16935.4 Da    PI: 9.5018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_28828.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-20554255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a+ k++g
  Rsa1.0_28828.1_g00001.1  5 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAAFKFKG 54
                             7********.**********93....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-33463IPR001471AP2/ERF domain
PfamPF008473.0E-14554IPR001471AP2/ERF domain
SMARTSM003804.6E-37568IPR001471AP2/ERF domain
CDDcd000183.21E-30563No hitNo description
SuperFamilySSF541711.5E-22563IPR016177DNA-binding domain
PROSITE profilePS5103224.684562IPR001471AP2/ERF domain
PRINTSPR003676.0E-12617IPR001471AP2/ERF domain
PRINTSPR003676.0E-122844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MRRRHYRGVR QRPWGKWAAE IRDPQKAARV WLGTFETAES AALAYDEAAF KFKGNKAKLN  60
FPERVNVINN DQLSNSAYYS SNQIESHNIP YYNRYYQDGS NNDMLSFSLT TSTTTAGTTS  120
SSSVGSSRPQ EEQDYDRFWR FGDSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-30466467ATERF1
3gcc_A8e-30466467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_28828.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0222121e-65AB022212.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22G18.
GenBankAY5608621e-65AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313571e-65BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
GenBankCP0026881e-65CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489632.11e-106PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH546e-63EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A078IT246e-73A0A078IT24_BRANA; BnaCnng24520D protein
TrEMBLA0A3P6B6086e-73A0A3P6B608_BRAOL; Uncharacterized protein
STRINGBo2g161710.16e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]