PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_28309.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 95aa MW: 10566 Da PI: 10.7747 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.6 | 3.9e-26 | 7 | 82 | 52 | 127 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +++ ++w fF++r++++a+g r++r+t gyWkatg+ +v+s +++++g+kkt+vfy+g+ap+g+kt+W m+ey+ Rsa1.0_28309.1_g00001.1 7 RGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYK 82 556789*********************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.671 | 1 | 95 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-26 | 6 | 88 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-11 | 12 | 82 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
LAGERCRGDA EQWLFFVPRQ EREARGGRPS RTTGLGYWKA TGSPGPVFSP DNRVIGVKKT 60 MVFYTGKAPT GRKTKWKMNE YKGIDETASA STIPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-21 | 4 | 82 | 62 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_28309.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437066.1 | 2e-63 | PREDICTED: putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 2e-59 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A078FA68 | 7e-62 | A0A078FA68_BRANA; BnaC03g54890D protein | ||||
TrEMBL | A0A397YZT9 | 4e-61 | A0A397YZT9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DSE9 | 4e-61 | M4DSE9_BRARP; Uncharacterized protein | ||||
STRING | Bra019442.1-P | 6e-62 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.1 | 9e-62 | NAC domain containing protein 61 |