PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_28241.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 90aa    MW: 10791.5 Da    PI: 10.1686
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_28241.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind42.61.7e-13888184
                             HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-....-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
             HSF_DNA-bind  1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs....nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84
                             aF k +y ++ed++l+ ++sws++++sf+++d+ ef+++v+p+  +++    nf  F+  L+ YgF +vk ++++        +F h+
  Rsa1.0_28241.1_g00001.1  8 AFYKSVYAVVEDSSLDAVVSWSKHKKSFIIWDPIEFQRRVMPTGRQKRilclNFPMFIDDLKYYGFVRVKGSKHR-------YHFGHP 88
                             59999************************************985544334449****************999877.......666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-4589IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-17589IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.26E-13885IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-14988IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MTNYAYSAFY KSVYAVVEDS SLDAVVSWSK HKKSFIIWDP IEFQRRVMPT GRQKRILCLN  60
FPMFIDDLKY YGFVRVKGSK HRYHFGHPKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_28241.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411463e-74AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474100.13e-63PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A397ZVP62e-48A0A397ZVP6_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZH522e-48A0A3P5ZH52_BRACM; Uncharacterized protein
STRINGBra022949.1-P6e-49(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1817268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-17Winged helix-turn-helix transcription repressor DNA-binding