PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_23355.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 27419.9 Da PI: 9.4243 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.3e-18 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Rsa1.0_23355.1_g00001.1 63 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.484 | 39 | 57 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-10 | 43 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.59E-22 | 43 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.814 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-17 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.63E-13 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 70 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
TVDRTGGHPL GQLCPHVRRS KMGFRSESVR FEGGGRNIRI GLNRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRHMS 120 PTSSSSNCCS SSMTTAATQD TGGSNGKMDQ ECEDGYYSMD DIWREIDQSG ANIIKPVKDI 180 YYSEQSCYLN FPPLASPAWE SSMESIWNMD ADDSKMSCFA IDQFPLSFEH GRSSPWSSLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-18 | 44 | 112 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-17 | 44 | 112 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-17 | 44 | 112 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 6e-18 | 44 | 112 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 4e-18 | 44 | 112 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-18 | 44 | 112 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_23355.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ075253 | 0.0 | DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472597.1 | 1e-164 | PREDICTED: transcription factor MYB59 isoform X2 | ||||
Swissprot | Q4JL84 | 1e-123 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A398A1C3 | 1e-140 | A0A398A1C3_BRACM; Uncharacterized protein | ||||
STRING | Bostr.26833s0259.1.p | 1e-137 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 1e-120 | myb domain protein 59 |
Publications ? help Back to Top | |||
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