PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_22859.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 25395.8 Da PI: 8.9321 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.9 | 5e-20 | 15 | 163 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk... 79 G++F+P d+el++eyL +k+egk+ + i+ d+y+ ePw L++ + + +++ewy+F++r + ++ gk+++r +t+ Rsa1.0_22859.1_g00001.1 15 GIQFQPYDDELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRnnd 97 99**********************655...9999**********86444444889*****99977655334446676664444556 PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfy......kgrapkge...........ktdWvmheyrl 128 sg Wka k ++++k + ++g +tL+f k+++++g +++W+m ey l Rsa1.0_22859.1_g00001.1 98 SGSWKANAK-GDIKDKeAKMVIGEHQTLAFVksevnnKKKQKSGDstscdvvvpgsESSWIMTEYML 163 9****9987.67777646778**********666655223333324444455555589999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.936 | 12 | 181 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-21 | 13 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-15 | 15 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MYEYDMYEYN DEDGGIQFQP YDDELINEYL IPKLEGKPRG EITMKDVYSK EPWLLDHPMG 60 SFFKKNEWYY FVTRTQLSKK KIGCGKKAKR KITRNNDSGS WKANAKGDIK DKEAKMVIGE 120 HQTLAFVKSE VNNKKKQKSG DSTSCDVVVP GSESSWIMTE YMLPEIEDKF RELVICKIHV 180 IENSNKKKKD DRHEASTSSY HHQHTTRIQF ILRRTY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_22859.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453519.1 | 1e-144 | PREDICTED: uncharacterized protein LOC108824593 | ||||
TrEMBL | A0A0D3ECL5 | 1e-108 | A0A0D3ECL5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397XK52 | 1e-107 | A0A397XK52_BRACM; Uncharacterized protein | ||||
STRING | Bo9g135820.1 | 1e-108 | (Brassica oleracea) | ||||
STRING | Bo9g135840.1 | 1e-109 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.2 | 3e-14 | NAC domain containing protein 35 |