PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_19652.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HRT-like

Protein Properties

Length: 288aa MW: 32130.2 Da PI: 9.7706

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_19652.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	49.9	5.4e-16	81	111	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvile G +C+r PvkgRKRCeeHKG+R+ Rsa1.0_19652.1_g00002.1 81 VCGVILESGGCCSRCPVKGRKRCEEHKGQRV 111 7*****************************7 PP
2	HRT-like	51.5	1.7e-16	137	167	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil + +C++ Pv+gRKRCe HKGmRi Rsa1.0_19652.1_g00002.1 137 TCGVILPNMEPCSKRPVPGRKRCEDHKGMRI 167 7*****************************7 PP
3	HRT-like	27.9	4.1e-09	207	233	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C ++++ G +C+r+ kg KRC++HK Rsa1.0_19652.1_g00002.1 207 CEATTKSGVPCTRSSPKGSKRCWQHKE 233 99************************7 PP
4	HRT-like	54.7	1.7e-17	254	283	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l +G +C+r+PvkgRKRCeeHKGmR+ Rsa1.0_19652.1_g00002.1 254 CGVQLCNGLICERSPVKGRKRCEEHKGMRV 283 *****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MRSRKSGIIS RVLFPFLRNQ VGIRIKGEKH VLEEERKLSC DVGEEKKKKS VSFLASIIKL 60 SRSRPQPVSD KLDEINSSGS VCGVILESGG CCSRCPVKGR KRCEEHKGQR VCRVSPVKPQ 120 PESFIGQDYK QEDSDVTCGV ILPNMEPCSK RPVPGRKRCE DHKGMRINAF LFLLNRTDLE 180 KTVKDEKPDP EPPTSNITEE EGLSRFCEAT TKSGVPCTRS SPKGSKRCWQ HKEKTSSDSL 240 PVKVIPVAGT QVRCGVQLCN GLICERSPVK GRKRCEEHKG MRVTIIPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_19652.1_g00002.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457851.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	1e-148	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A397XJX7	1e-170	A0A397XJX7_BRACM; Uncharacterized protein
STRING	Bra002792.1-P	1e-171	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-150	effector of transcription2