PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_19218.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GRAS | ||||||||
Protein Properties | Length: 234aa MW: 25898.3 Da PI: 4.5742 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 259 | 1.7e-79 | 1 | 224 | 142 | 374 |
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserde 226 +R+Tgvg + ++++g++La++A+++gv+fef+ l++++l+dle+e+++++p E+++Vn+v++lh ll++++s+e+ Rsa1.0_19218.1_g00001.1 1 FRLTGVGG------DGVQQLGWKLAQLAQAIGVEFEFKGLTVESLTDLEPEMFETRPeSETVVVNSVFELHPLLARPGSIEK---- 76 69999999......99*****************************************9************************.... PP GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 +L++vk ++P +v+vveqea+hn++ Flerf eal+yys+lfdsle ++ s++r + E+ lgr+i nvva+eg++r+erhet+ Rsa1.0_19218.1_g00001.1 77 LLETVKAVRPSIVTVVEQEANHNGAVFLERFNEALHYYSSLFDSLEDGVMIPSRDRLMSEAY-LGRQILNVVAAEGTDRIERHETM 161 *************************************************9999999888777.*********************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Wr+r+++aGF pv+l+++a kqa+lll+ + +dgyrvee++gsl+l W+++pL+++SaW+ Rsa1.0_19218.1_g00001.1 162 DQWRKRMGSAGFDPVSLGSDAFKQASLLLALSGgGDGYRVEENEGSLMLAWQTKPLIAASAWK 224 **************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 5.8E-77 | 1 | 224 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 34.092 | 1 | 203 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
FRLTGVGGDG VQQLGWKLAQ LAQAIGVEFE FKGLTVESLT DLEPEMFETR PESETVVVNS 60 VFELHPLLAR PGSIEKLLET VKAVRPSIVT VVEQEANHNG AVFLERFNEA LHYYSSLFDS 120 LEDGVMIPSR DRLMSEAYLG RQILNVVAAE GTDRIERHET MDQWRKRMGS AGFDPVSLGS 180 DAFKQASLLL ALSGGGDGYR VEENEGSLML AWQTKPLIAA SAWKVSDVAA EWRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-31 | 2 | 223 | 161 | 378 | Protein SCARECROW |
5b3h_A | 7e-31 | 2 | 223 | 160 | 377 | Protein SCARECROW |
5b3h_D | 7e-31 | 2 | 223 | 160 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_19218.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442110.1 | 1e-168 | PREDICTED: DELLA protein RGL3-like | ||||
Swissprot | Q9LF53 | 1e-140 | RGL3_ARATH; DELLA protein RGL3 | ||||
TrEMBL | M4DBW3 | 1e-156 | M4DBW3_BRARP; Uncharacterized protein | ||||
STRING | Bra013973.1-P | 1e-157 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 1e-131 | RGA-like protein 3 |