PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_18755.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 23208.8 Da PI: 6.1588 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.8 | 2.4e-07 | 2 | 25 | 32 | 55 |
AP2 32 slgkfgtaeeAakaaiaarkkleg 55 +lg+f t eeAa+a+++a+ l+g Rsa1.0_18755.1_g00001.1 2 WLGTFETSEEAARAYDEAACLLRG 25 9******************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.181 | 1 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-16 | 1 | 35 | No hit | No description |
SuperFamily | SSF54171 | 4.05E-9 | 1 | 33 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-6 | 1 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-14 | 1 | 34 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-4 | 2 | 25 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MWLGTFETSE EAARAYDEAA CLLRGSNTRT NFANHFPNNT HLSLKIRNLL HQKQIIKQQQ 60 QQNKPVSSFA EHNINYTSPA TSPTASTTTT LMPFSNNVYR PDSSVILQQE PDSVQLLYSW 120 PLVSELNHQV PLTQRGEEPH GHVSNHKLTD QHLGLAEIER QISASLYAMH GATTYYNNMN 180 AEYPIFDPTD PIWDLPSLSQ LFCPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_18755.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131751.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | Q6J9S1 | 2e-96 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | M4CQM9 | 1e-115 | M4CQM9_BRARP; Uncharacterized protein | ||||
STRING | Bra006518.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7526 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-96 | related to AP2 11 |
Publications ? help Back to Top | |||
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