PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_18041.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 27269.8 Da PI: 10.1032 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.1 | 7.3e-33 | 81 | 181 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h ++++ + led++g++W+++++y+++s++yvltkGW++Fvk++gL++gD v Rsa1.0_18041.1_g00001.1 81 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpaTTTAAKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDAVC 166 89*************************99986666799************************************************ PP EEE-SSSEE..EEEE CS B3 82 Fkldgrsefelvvkv 96 F+++ +++l++ + Rsa1.0_18041.1_g00001.1 167 FERSTGPDRQLYIDW 181 **8766777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-42 | 74 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-32 | 78 | 179 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.43E-30 | 80 | 170 | No hit | No description |
Pfam | PF02362 | 9.2E-30 | 81 | 181 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-26 | 81 | 185 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.692 | 81 | 185 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
KFRGRDAAVT NFKSPADDSE SAFLEAHSKA EIVDMLRKHT YADELRQSER KFLDGDGNNG 60 KRRKTATAVN ENDGVSRELL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLP ATTTAAKGVL 120 INLEDRTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLR AGDAVCFERS TGPDRQLYID 180 WKVRSGTEVI NPVQNVVRLF GVNIFNAATN AKTNDECGGE KRSREVDLFA LGCSKKQAII 240 NAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 7e-62 | 78 | 189 | 11 | 122 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_18041.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 3e-64 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AY056169 | 3e-64 | AY056169.1 Arabidopsis thaliana At1g25560 mRNA sequence. | |||
GenBank | AY091069 | 3e-64 | AY091069.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | AY122941 | 3e-64 | AY122941.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | CP002684 | 3e-64 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447844.1 | 1e-180 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 1e-128 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A397YL50 | 1e-148 | A0A397YL50_BRACM; Uncharacterized protein | ||||
STRING | Bo3g138550.1 | 1e-145 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-130 | RAV family protein |