PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_17750.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23363.8 Da PI: 8.3664 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i +lqqq Rsa1.0_17750.1_g00001.1 41 PCAACKLLRRRCAQECPFSPYFSPHEPLKFASVHKVFGASNVSKMLMEVPEGHRADAANSLVYEANVRLRDPVYGCMGAIVALQQQ 126 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ l+ael ++++e Rsa1.0_17750.1_g00001.1 127 VQALQAELTAVRSE 140 *********99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.878 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-41 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
ERLESEIGKR NKREADALPH QMAGIRRPIS GPLGALNTIT PCAACKLLRR RCAQECPFSP 60 YFSPHEPLKF ASVHKVFGAS NVSKMLMEVP EGHRADAANS LVYEANVRLR DPVYGCMGAI 120 VALQQQVQAL QAELTAVRSE ILKYKQREAV ATLIVPSNSQ VAGYHNSGDV SVITLPPQTP 180 STPPQPTAPL PDPPPPSSCV YSQPTTRALQ YGEIE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-41 | 41 | 144 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-41 | 41 | 144 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_17750.1_g00001.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438046.1 | 1e-140 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 1e-111 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A087H476 | 1e-126 | A0A087H476_ARAAL; Uncharacterized protein | ||||
STRING | A0A087H476 | 1e-127 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-105 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|