PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_15927.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 317aa MW: 35718.5 Da PI: 8.3874

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_15927.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.8	7.7e-31	5	79	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+++ s++ + +glkktLvfy+g+apkg++t+W+m+eyrl Rsa1.0_15927.1_g00001.1 5 GEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRTIRSESARPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 79 689**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.663	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-34	3	100	IPR003441	NAC domain
Pfam	PF02365	5.1E-13	9	79	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAAIGEKEWY FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RTIRSESARP IGLKKTLVFY 60 SGKAPKGTRT SWIMNEYRLP HHETEKYQKA EISLCRVYKR PGVEDHSSLP RSLSTRHHNH 120 TSSSSLLALR QQQQQHHSSS SNHLDNNNLE KLSTEYSGDG STITTINRNS DVNQTIYNPL 180 TTTIPLANQN IYHPLPYGAS NTPMISTSNK EDDETAIVDD LQRLVNYQIS DGGSNINHQY 240 YQVAQQFHNQ QQLNANALQL VAAATTAALA PQTQAALAMS MVPAGTTPNT ALWDLWNPLL 300 PDGNRDHYTN ALFEEFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-36	2	100	66	165	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-36	2	100	66	165	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-36	2	100	66	165	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-36	2	100	66	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-36	2	100	69	168	NAC domain-containing protein 19
3swm_B	9e-36	2	100	69	168	NAC domain-containing protein 19
3swm_C	9e-36	2	100	69	168	NAC domain-containing protein 19
3swm_D	9e-36	2	100	69	168	NAC domain-containing protein 19
3swp_A	9e-36	2	100	69	168	NAC domain-containing protein 19
3swp_B	9e-36	2	100	69	168	NAC domain-containing protein 19
3swp_C	9e-36	2	100	69	168	NAC domain-containing protein 19
3swp_D	9e-36	2	100	69	168	NAC domain-containing protein 19
4dul_A	8e-36	2	100	66	165	NAC domain-containing protein 19
4dul_B	8e-36	2	100	66	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_15927.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189452	1e-153	AC189452.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB072E02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455723.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-155	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A397XWF3	0.0	A0A397XWF3_BRACM; Uncharacterized protein
STRING	Bra017416.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5436	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-116	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]