PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_15651.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 179aa MW: 20210.4 Da PI: 7.0681 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.7 | 1.5e-12 | 1 | 42 | 86 | 128 |
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+v+s + vglkk+Lv+y g+a kg+ktdW+mhe+rl Rsa1.0_15651.1_g00001.1 1 TGIDKPVYS-NLDCVGLKKSLVYYLGSAGKGSKTDWMMHEFRL 42 7999*****.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-17 | 1 | 64 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.361 | 1 | 65 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-4 | 14 | 42 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
TGIDKPVYSN LDCVGLKKSL VYYLGSAGKG SKTDWMMHEF RLPSSSESPT PQAAEVWTLC 60 RIFKRVTHHR NPTIVQPNRR PVITLTDSGS KTSSLDSDHT SHHVVESLSH KLHEPQFQPQ 120 TQNPYYNQLT TVGFNQPTYN TCHENNFLNL WNINGGDFIG DATSWDELRS VIDGNTNHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-13 | 1 | 65 | 101 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-13 | 1 | 65 | 101 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-13 | 1 | 65 | 101 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-13 | 1 | 65 | 101 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-13 | 1 | 65 | 104 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-13 | 1 | 65 | 101 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-13 | 1 | 65 | 101 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_15651.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481287.1 | 1e-128 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 3e-88 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A078H0L4 | 1e-112 | A0A078H0L4_BRANA; BnaA04g24740D protein | ||||
TrEMBL | A0A397ZQL5 | 1e-112 | A0A397ZQL5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F9I0 | 1e-112 | M4F9I0_BRARP; Uncharacterized protein | ||||
STRING | Bra037743.1-P | 1e-112 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-79 | NAC domain containing protein 42 |