PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_15288.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 286aa    MW: 31242.4 Da    PI: 7.4663
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_15288.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-333892155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+R 
  Rsa1.0_15288.1_g00001.1 38 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRQ 92
                             79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9743595IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-323593IPR009057Homeodomain-like
SuperFamilySSF466898.06E-173793IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-243892IPR006447Myb domain, plants
PfamPF002491.5E-74090IPR001005SANT/Myb domain
PfamPF143791.1E-26136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MYSAIRSSLP LDGSMGIEYS DGTNLPVDAC LVLTTDPKPR LRWTSELHER FVDAVTQLGG  60
PDKATPKTIM RTMGVKGLTL YHLKSHLQKF RQGRQSCKES TENSKDVSCV AESQDTGSSS  120
TSSLRLAAQE QNESYQVTEA LRAQMEVQRR LHEQLEVQRR LQLRIEAQGK YLQSILEKAC  180
KAIEDQAVAF AGLDAAREEL SELAIKVSSG CQGTFDTTKM TVPSLSELAV AIEHKNNCSA  240
ESSSTVGSPV SASLMKKRYR GVLGNGERLV MGHEAGWVMP SSSSLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_15288.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532350.0AK353235.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451506.10.0PREDICTED: protein PHR1-LIKE 3 isoform X2
SwissprotQ8LAJ70.0PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLR0GXT30.0R0GXT3_9BRAS; Uncharacterized protein
STRINGCagra.6748s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-178G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]