PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_15021.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 318aa    MW: 36772.3 Da    PI: 10.0731
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_15021.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.81.4e-25188237352
                   RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              +++ ledlskyF  pi +A+++L+v+lTvLK++CR++GI+RWPhRk+ksl
  Rsa1.0_15021.1_g00001.1 188 ARLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKLKSL 237
                              67889*******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.031172257IPR003035RWP-RK domain
PfamPF020421.4E-21190237IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAHSLTSLAI FQGVNHKEMI RSLHVYGSVE IEREFLFERK SRYVEKKAKP LFCSEGLRRP  60
EISLGSVFGT WRCIFVFRSN HSLPQFPTLL CPSRNPKLVD VPNLANVLKS ISELKPKKPS  120
NVSDIEQCSS RVPYCNVDQP KPQKFVLKQD LNCLPDSETE SEESEDDQTE HSESEILKKR  180
RTPSQHVARL CLEDLSKYFG VPIVEASRKL NVGLTVLKKK CREFGIPRWP HRKLKSLDSL  240
IHDLQEEAEK QRENNKAAAM VVAKKQKKLE TEMRNIVERP FMEIQIETKR FRQDNFKKRH  300
RASRAKKNQE SLATSSST
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_15021.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311354e-73AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615874e-73AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026874e-73CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468397.10.0PREDICTED: protein RKD5 isoform X2
SwissprotO817911e-170RKD5_ARATH; Protein RKD5
TrEMBLA0A0D3A1Q80.0A0A0D3A1Q8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FQR50.0A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo1g006340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120492429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-150RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]