PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_15021.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 318aa MW: 36772.3 Da PI: 10.0731 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.8 | 1.4e-25 | 188 | 237 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRk+ksl Rsa1.0_15021.1_g00001.1 188 ARLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKLKSL 237 67889*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 19.031 | 172 | 257 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-21 | 190 | 237 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAHSLTSLAI FQGVNHKEMI RSLHVYGSVE IEREFLFERK SRYVEKKAKP LFCSEGLRRP 60 EISLGSVFGT WRCIFVFRSN HSLPQFPTLL CPSRNPKLVD VPNLANVLKS ISELKPKKPS 120 NVSDIEQCSS RVPYCNVDQP KPQKFVLKQD LNCLPDSETE SEESEDDQTE HSESEILKKR 180 RTPSQHVARL CLEDLSKYFG VPIVEASRKL NVGLTVLKKK CREFGIPRWP HRKLKSLDSL 240 IHDLQEEAEK QRENNKAAAM VVAKKQKKLE TEMRNIVERP FMEIQIETKR FRQDNFKKRH 300 RASRAKKNQE SLATSSST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_15021.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 4e-73 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 4e-73 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 4e-73 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468397.1 | 0.0 | PREDICTED: protein RKD5 isoform X2 | ||||
Swissprot | O81791 | 1e-170 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A0D3A1Q8 | 0.0 | A0A0D3A1Q8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQR5 | 0.0 | A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo1g006340.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-150 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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